Single Cell Pipeline automation
Automation of a preprocessing pipeline for Single Cell High-Throughput Sequencing data based on Docker Linux containers.
With the use of Docker containers and pipeline automation tools based on open source standard components a system is established which can dynamically adapt to different infrastructures in a scalable modular way.
The following project areas are covered:
- Conceptual development of process chains
- Construction of a modular Docker system implementation on Docker Cluster
- Creation of toolset images
- Configuration of process control (Pipeline Automation) for data preprocessing and quality assurance for pipelines with different adaptable and standardized workflows
- Virtualization
- Performance optimization of existing infrastructure
- Integration into existing processes
