Single Cell Pipeline automation

Automation of a preprocessing pipeline for Single Cell High-Throughput Sequencing data based on Docker Linux containers.

With the use of Docker containers and pipeline automation tools based on open source standard components a system is established which can dynamically adapt to different infrastructures in a scalable modular way.

The following project areas are covered:

  • Conceptual development of process chains
  • Construction of a modular Docker system implementation on Docker Cluster
  • Creation of toolset images
  • Configuration of process control (Pipeline Automation) for data preprocessing and quality assurance for pipelines with different adaptable and standardized workflows
  • Virtualization
  • Performance optimization of existing infrastructure
  • Integration into existing processes